Could you tell us how you discovered the last ten minutes were silent - in iTunes, QuickTime Player, on your iPod?
Do you still have the Audiobook Builder Project with the original CD rips intact? If so, you can browse the package contents of that Project document in the Finder (just right-click on the document and select "Show Package Contents"), listening to the last ten minutes of each file to see if the original rips exhibit the issue. If they don't, the root cause is somewhere else in Audiobook Builder's build process. I'd lean toward the latter to be the case because the actual rip is a fairly straightforward QuickTime export from the original file(s) on CD while, for its part, Audiobook Builder does a lot of extracurricular activity to produce actual working Audiobook files. I would suspect our code before Apple's.
Would you be willing to send us the misbehaving Audiobook so we can examine the file structure? It'll be far too large for email but you could send it through a file transfer service such as
http://fileho.com or even send it through iChat. If you'd like to do it through iChat please email us at
support@splasm.com with your screen name and we'll contact you shortly.